Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1927
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   144   5e-37
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   3.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  144 bits (350), Expect = 5e-37
 Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%)
 Frame = +2

Query: 2   KVLPYFKKSEKFITDSSGDDKYHGTEGYLYVTKDKNNNPFEELLIKAYTEIGVKNLSDVN 181
           +V+PY+ KSE     S    KYH + G + V +     PF   ++KA  E G     D++
Sbjct: 184 EVMPYYLKSENNTELSRVGTKYHRSGGLMNVERFPYQPPFAWKILKAAEEAGFGVSEDLS 243

Query: 182 GVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLATKILFEKNTNIVSGIS 361
           G    G T AQT   NG+R+S+ARAF++P  NR NLHVI N   TK+         +G++
Sbjct: 244 GDRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVTKV--RTLNKRATGVN 301

Query: 362 LHRDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDVVADLP-VGENLQD 538
           +  +G+   +  ++E+I+S GS+N+PQLLMLSGIGPK  L++LGI VV DLP VGENL +
Sbjct: 302 VLINGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLHN 361

Query: 539 H 541
           H
Sbjct: 362 H 362


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 372 SLCSEIPLTILVFFSNNILVASVFLMTCKFFLFVIGLKKARAVLILMPL*IVVCAL 205
           SLCS I L++ VFF   +L+A +   T      +        +L+ + + I VC L
Sbjct: 282 SLCSSILLSLTVFF---LLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITVCVL 334


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 95  TKDKNNNPFEELLIKAYTEIGVKNLSDVNGVNQMGVTRAQT 217
           T  + N PF+ L +   T   + ++  ++G  + G+T   T
Sbjct: 88  TTQEINKPFKRLELFNITTTTIHSIHSIDGDEENGLTSEST 128


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 59  DKYHGTEGYLYVTKDKNNNP 118
           DK++GT GY      K N P
Sbjct: 212 DKFYGTPGYTAPEVIKQNRP 231


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 373 WKRYNSEHKKGVNSIGWVYKFTAAFNVV 456
           W  +NS    GV+   W Y   AA + +
Sbjct: 235 WLAFNSGSTYGVSGQRWQYAARAAISTM 262


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 554 IVFKAPAEDGMSLTLPIIAI 613
           +VF  P+E G  +TL I A+
Sbjct: 233 LVFYVPSESGEKVTLGISAL 252


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 256 SPCGTNSNAIMNCSLRSCYSH 194
           +P  TNSN+I + S  S YSH
Sbjct: 215 APRLTNSNSIKHESDNSDYSH 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,292
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)