Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1922
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.21 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   6.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 421 CLLHITKAGSQILDVVMRWADAEVTSRETSAMYQ 320
           C + I   G  +LDVVM W +  V   E + + Q
Sbjct: 175 CTVEIESYGYTVLDVVMYWKETPVRGVEEAELPQ 208


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 239 VRKFYVSIFNLPGFLTICFPQLCF---VPYLCI 150
           V +FY  I ++ G+   C+ ++C+    P +C+
Sbjct: 472 VNRFYDGIRDMIGYYPCCWWKICWTITTPAICV 504


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 239 VRKFYVSIFNLPGFLTICFPQLCF---VPYLCI 150
           V +FY  I ++ G+   C+ ++C+    P +C+
Sbjct: 525 VNRFYDGIRDMIGYYPCCWWKICWTITTPAICV 557


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 576 LAGAALTLVVFGVNDYFKSC 635
           L G   T + FGVN + K C
Sbjct: 38  LRGMQFTDITFGVNKWSKVC 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,866
Number of Sequences: 438
Number of extensions: 3239
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)