Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1916
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 YTMEQMFEVVSDVGSYNKFLPWCKKSIVL 437
           Y ME   ++  D     KFL W K+ + L
Sbjct: 63  YDMESNMDMYKDKNVVQKFLWWYKQGMFL 91


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 351 YTMEQMFEVVSDVGSYNKFLPWCKKSIVL 437
           Y ME   ++  D     KFL W K+ + L
Sbjct: 63  YDMESNMDMYKDKNVVQKFLWWYKQGMFL 91


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 338 PSSINSCFVCYWQVYKT 288
           P+S     +CYW +Y T
Sbjct: 477 PASFGLLNICYWVIYVT 493


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 529  GLTSVTFEV*LSLIGGKPMIKSA 461
            GLTS  F+V L+L G + M+K++
Sbjct: 1565 GLTSDKFDVSLALDGERVMLKAS 1587


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 320 CFVCYWQVYKTTILLLN 270
           C+ C W+  KTT  ++N
Sbjct: 187 CYFCIWKGVKTTGKVVN 203


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 95  KYKCINSNKCFSHY*N*YNDYLSKLCRRAIHFSQ 196
           KY   N+N   ++Y N YN+   KL    I+  Q
Sbjct: 330 KYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 74  LHSTLIDLILCNLFHACSQF 15
           +  T+ DLI  +LFH  S F
Sbjct: 169 ISGTVFDLINIHLFHDASNF 188


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 577 IWWKSLPSEHSAFTKCGLT 521
           +WW+++ +E     KC  T
Sbjct: 183 VWWRAVRTEEVPEDKCPFT 201


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 209 NYIFLAKNVSPYGTTLRDNHCINSN 135
           N+  L  NV      +R+ HC+N+N
Sbjct: 397 NFRILGANVKEL---IRNTHCVNNN 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,385
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)