Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1910
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 73  IGGSAYASAMVTSTSTPGS 129
           +G  +Y +A + +TSTPGS
Sbjct: 220 MGRPSYTTATMATTSTPGS 238


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 665 NKEAIADAEEGGDDQEFERV 606
           N E++  +E  G+D ++ERV
Sbjct: 278 NTESLMKSENQGNDVQYERV 297


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 458 THRCRCNF 481
           THRCR NF
Sbjct: 180 THRCRINF 187


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 632 PLLRHQRWPPCC 667
           P  RH+++ PCC
Sbjct: 207 PAERHKKYYPCC 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,857
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)