Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1880
(597 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 21 6.9
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 21 9.2
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 9.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 161 YLIGMPGKKNTITYQCCPEP 180
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 161 YLIGMPGKKNTITYQCCPEP 180
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 161 YLIGMPGKKNTITYQCCPEP 180
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 161 YLIGMPGKKNTITYQCCPEP 180
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 161 YLIGMPGKKNTITYQCCPEP 180
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 161 YLIGMPGKKNTITYQCCPEP 180
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 229 YLIGMPGKKNTITYQCCPEP 248
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 513 YPCGLPIRPTTIKYQTWPQP 572
Y G+P + TI YQ P+P
Sbjct: 229 YLIGMPGKKNTITYQCCPEP 248
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.4 bits (43), Expect = 6.9
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 528 PIRPTTIKYQT 560
P+RP T++Y T
Sbjct: 338 PVRPATVQYDT 348
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = -1
Query: 201 IQEFSKVWSFSSNLLNSARI 142
I +F ++W S L+N+ ++
Sbjct: 133 IDKFDRLWVLDSGLINNIQL 152
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 210 WCQIQEFSKVWSFSSNLLNSARI 142
WC I VW ++++LN I
Sbjct: 137 WCSIWLAVDVWMCTASILNLCAI 159
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,621
Number of Sequences: 438
Number of extensions: 4149
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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