Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1879
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.33 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 328 VHEVNQTLQRDLIDQAQLRAISQAH 402
           +H++ Q LQ+ ++   QL++  Q H
Sbjct: 71  IHQMQQLLQQHILSPTQLQSFMQQH 95


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = -3

Query: 237 DC--LLCQRVQDFGFYCDCHYDWS 172
           DC  LL   +  FG YC  H D S
Sbjct: 408 DCVTLLFSGIVGFGAYCAAHTDSS 431


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = -3

Query: 237 DC--LLCQRVQDFGFYCDCHYDWS 172
           DC  LL   +  FG YC  H D S
Sbjct: 408 DCVTLLFSGIVGFGAYCAAHTDSS 431


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 10/44 (22%), Positives = 17/44 (38%)
 Frame = +1

Query: 214 HPLAKKAVSRGPCLVAHLGQAVNHQNRITLPVLKDHQMVHEVNQ 345
           H L  + +     +     Q  N+Q  I +PV     + H+  Q
Sbjct: 165 HHLDSRVIQEAQNIAIQNTQGKNNQQNILIPVNYSALLSHDEQQ 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,774
Number of Sequences: 438
Number of extensions: 1256
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)