Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1877
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 63  VPTLCLYCRERFESKLVAFKH 125
           +PT C++CR   E +    KH
Sbjct: 36  LPTECVFCRNNGEEEAYYRKH 56


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 159 HLTNSQNKHNNN 124
           H + S N+HNNN
Sbjct: 452 HSSKSNNRHNNN 463


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +2

Query: 386 IGSEHNIERRLVYFV 430
           +  ++N+E +L+YF+
Sbjct: 210 LNHDYNLENKLIYFI 224


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 198 IAFLSGNGY*FNVFYLCIQISLS 266
           I F +GN +   +  LC+ ISLS
Sbjct: 725 IYFGTGNAHETQITTLCVAISLS 747


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 150 NSQNKHNN 127
           N+QNKHNN
Sbjct: 591 NNQNKHNN 598


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 198 IAFLSGNGY*FNVFYLCIQISLS 266
           I F +GN +   +  LC+ ISLS
Sbjct: 815 IYFGTGNAHETQITTLCVAISLS 837


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,092
Number of Sequences: 438
Number of extensions: 2723
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)