Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1875
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    30   0.019
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    30   0.019
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    30   0.019
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    29   0.057
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    29   0.057
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    29   0.057
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    29   0.057
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   8.7  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPPQRGTWLPS 530
           PP+    WI      PR R    P P+P +  P+    RPPQ   + P+
Sbjct: 130 PPRPMGPWISIQEQIPRFRYIGPPTPFPRFIPPNAYRFRPPQNPRFGPT 178


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPPQRGTWLPS 530
           PP+    WI      PR R    P P+P +  P+    RPPQ   + P+
Sbjct: 130 PPRPMGPWISIQEQIPRFRYIGPPTPFPRFIPPNAYRFRPPQNPRFGPT 178


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPPQRGTWLPS 530
           PP+    WI      PR R    P P+P +  P+    RPPQ   + P+
Sbjct: 368 PPRPMGPWISIQEQIPRFRYIGPPTPFPRFIPPNAYRFRPPQNPRFGPT 416


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPP 554
           PP+    WI      PR R    P P+P +  P+    RPP
Sbjct: 131 PPRPMGPWISVQEQVPRFRCIGPPTPFPRFIPPNAYRFRPP 171


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPP 554
           PP+    WI      PR R    P P+P +  P+    RPP
Sbjct: 136 PPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPP 176


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPP 554
           PP+    WI      PR R    P P+P +  P+    RPP
Sbjct: 136 PPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPP 176


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 673 PPQAQRFWIRRTRHAPR-RAPSQPQPWPAYEQPHRISCRPP 554
           PP+    WI      PR R    P P+P +  P+    RPP
Sbjct: 364 PPRPMGPWISMQEQIPRFRYIGPPTPFPRFIPPNAYRLRPP 404


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 47  CRVDPRAEFLQPGGS 3
           C +  + EFL PGGS
Sbjct: 62  CEIYAKCEFLNPGGS 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 670 PQAQRFWIRRTRHAPRRAPSQPQPWPAYEQP 578
           PQ Q+   ++ +   ++   Q Q WP  E+P
Sbjct: 440 PQQQQQQQQQQQQQQQQQQQQQQHWPMEEEP 470


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 466 RKVLENRSLADEERMDALENQLKEARFLA 552
           R+    R+    E++ ALEN+ K  R+L+
Sbjct: 6   REARRARTAFTYEQLVALENKFKTTRYLS 34


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 673  PPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPHRISCRPPQR 548
            P Q Q+   ++      + P Q QP P  +Q  +   +P Q+
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 454 SERARKVLENRSLADEERMDALENQLKEARFLAEEADKK 570
           SER     EN  L  E+   ALE+ LK    + E+ +++
Sbjct: 95  SERRNIFGENDELIAEKVAHALESGLKVIACIGEKLEER 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.126    0.320 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,776
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)