Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1865
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 266 LMFALGHLKIRSNSDLYKYLNASVTNSYLFTQKQKNVLSL-VYTKFS 129
           LM  L  +KI ++    + LNA VTN + F     + + L ++T F+
Sbjct: 492 LMMILKEIKIITDQLKSEELNAKVTNDWKFAAMVIDRMCLIIFTLFT 538


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 278 LIQRLMFALGHLKIRSNSDLYKYLNASVTNS 186
           LIQ ++  + +  + SN+D+Y Y N    N+
Sbjct: 358 LIQNIIQEMKNDVLLSNNDVYLYQNTMSNNN 388


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 278 LIQRLMFALGHLKIRSNSDLYKYLNASVTNS 186
           LIQ ++  + +  + SN+D+Y Y N    N+
Sbjct: 396 LIQNIIQEMKNDVLLSNNDVYLYQNTMSNNN 426


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 172 WVNKYEFVTLAFKYLYKSLLLRI-LRW 249
           W N Y  + LA+   Y  + LRI L W
Sbjct: 110 WTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 172 WVNKYEFVTLAFKYLYKSLLLRI-LRW 249
           W N Y  + LA+   Y  + LRI L W
Sbjct: 163 WTNIYYIIILAWALFYLLVSLRIDLPW 189


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 119 YIDLRISCIQD*VHFFAFG*TNMNL*HSHLNIYTNRC 229
           Y+  ++ CI D  H    G     L    LN + NRC
Sbjct: 32  YVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHCNRC 68


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 69  KNLCTLDAENC 101
           K LC  DA+NC
Sbjct: 668 KTLCKCDAQNC 678


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 566 IDMSIQIDLNIIVCFKEYG 510
           +D+++ +DL+I    +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,564
Number of Sequences: 438
Number of extensions: 4195
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)