Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1841
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.98 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 159 IIIYFILNRNRVLFLYHFTYRNNCIMHL*TQNFKSAWLKVAQPAARGSTSSR 4
           IIIY IL     +F Y  T  N  + ++ +  F+ A+ K+  P   G  SS+
Sbjct: 323 IIIYTILTYMSGVFYYLSTTVNPLLYNIMSNKFREAF-KLMLPNCCGKWSSQ 373


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 344 KDQYSSLIRQWAYCHM*IDR 285
           KD++ S+   W Y  M +DR
Sbjct: 529 KDKFESVEEDWKYVAMVLDR 548


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 247 PEIFWRECTESWRRSIYIWQ*AHCLISEEYWSFQNQGGRKSPNVTEV 387
           PEI+ +EC E  + S        C+   + +    + G+K  +V  V
Sbjct: 39  PEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEADVVAV 85


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 247 PEIFWRECTESWRRSIYIWQ*AHCLISEEYWSFQNQGGRKSPNVTEV 387
           PEI+ +EC E  + S        C+   + +    + G+K  +V  V
Sbjct: 39  PEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEADVVAV 85


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 247 PEIFWRECTESWRRSIYIWQ*AHCLISEEYWSFQNQGGRKSPNVTEV 387
           PEI+ +EC E  + S        C+   + +    + G+K  +V  V
Sbjct: 39  PEIYSKECDEMKKDSAVKGIPVSCISGRDRYECIEKVGKKEADVVAV 85


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 344 KDQYSSLIRQWAYCHM*IDRRQLSV 270
           +D Y      W Y  M IDR QL +
Sbjct: 461 EDLYIQTREDWKYVAMVIDRLQLYI 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,903
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)