Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1825
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.5  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   9.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 468 KKFKLKCTYRFYTFLHDP*NTSYLVLHYVFMDIKTRNILKTMAE 337
           K+  LKC  +  +FL      + L+L      +KTR I +   E
Sbjct: 661 KQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNE 704


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 229 GFLCQCVACYCLKS*LYIDSFFGTCLKIRD 140
           G     +    L S +++ SFFG C  IR+
Sbjct: 47  GLAFPSITLIVLGSIIFVISFFGCCGAIRE 76


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 468 KKFKLKCTYRFYTFLHDP*NTSYLVLHYVFMDIKTRNILKTMAE 337
           K+  LKC  +  +FL      + L+L      +KTR I +   E
Sbjct: 751 KQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNE 794


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 221 QETEAELYNEFPDQIKL 271
           ++ EA  Y EFP+  KL
Sbjct: 52  EDVEATEYGEFPEDEKL 68


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 550 FFYMFTDYRNRIKNYQCII 494
           F Y F DY NR +  + II
Sbjct: 27  FDYYFYDYSNRTQALESII 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,330
Number of Sequences: 438
Number of extensions: 3241
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)