Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1816
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 401 SLFYYITLSTYYARLKLIKLNTFCNLYDQS 490
           S F  I L T   R+  ++  T+CNL+  S
Sbjct: 518 SYFGEICLLTNARRVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 401 SLFYYITLSTYYARLKLIKLNTFCNLYDQS 490
           S F  I L T   R+  ++  T+CNL+  S
Sbjct: 486 SYFGEICLLTNARRVASVRAETYCNLFSLS 515


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 288 TLNIYYYGSNAGN*RAYNMSFIVIKQLEIGNAVYYI 181
           T +  YYG  AGN  + +++F + +++      YYI
Sbjct: 205 TTSQQYYGHFAGNFSSISITFKLAREMGFFMMDYYI 240


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 332 KSHLERRKLRGKQQAPTIEPF*DSLFYYITLSTYY 436
           +SHL   + R  Q  PT+      LF Y  +S+ Y
Sbjct: 347 QSHLISNENRDFQTTPTVSVEQPHLFLYPEVSSTY 381


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 327 GKNRILNAGNYEASNKRRL 383
           G++     G Y+ SNKRRL
Sbjct: 312 GEHTEAEGGIYDISNKRRL 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,912
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)