Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1815
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 63 4e-11
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 3e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 47 3e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 6e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 8e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 37 0.003
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.004
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.007
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.013
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.017
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.039
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.068
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 32 0.068
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.090
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.12
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.12
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.27
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.27
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.27
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.48
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 29 0.63
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 1.5
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 1.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 27 2.6
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 26 4.5
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.5
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 5.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 5.9
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 62.9 bits (146), Expect = 4e-11
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Frame = +2
Query: 125 FSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNP 289
FS GK+ SCK+ + +GYGFV + + A A + NG+L+ +K + V H +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 290 ELKPPTKP-EADW-NLYICNLPNELTLQGLHGLFAQFGRIINSRIA-------AGIAFVL 442
E + + +A++ N+YI NL E+T Q LF QFG I + + G FV
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 443 YEHQYEAERAIQNIN 487
Y + A++A+ +N
Sbjct: 308 YANHECAQKAVDELN 322
Score = 58.4 bits (135), Expect = 9e-10
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Frame = +2
Query: 47 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLES---CKLIANR---GYGFVEYTRPDD 208
G + L V + +T+ M+F LF+++G + S C+ R GY +V + +D
Sbjct: 74 GTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMED 133
Query: 209 AVKARKAFNGLLMQNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQGLHGLFA 388
KA N L++ + ++ + +P L+ N++I NL + + LH F+
Sbjct: 134 GEKALDELNYTLIKGRPCRIMWSQRDPSLRKM----GTGNVFIKNLDPAIDNKALHDTFS 189
Query: 389 QFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNING 490
FG+I++ ++A G FV ++ A AI+++NG
Sbjct: 190 AFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 44.8 bits (101), Expect = 1e-05
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Frame = +2
Query: 65 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKA 229
T + + + +T+ LF G++ S L+ + RG+GFV Y + A KA
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 230 FNGLLMQNKTLKVSHALLNPELKPPTKPEADW------------NLYICNLPNELTLQGL 373
N + K L V A E + + + NL+I NL +E+ + L
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 374 HGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNIN 487
F+ FG I +++I + G FV Y EA +A+ +N
Sbjct: 381 KAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.8 bits (106), Expect = 3e-06
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 24/183 (13%)
Frame = +2
Query: 59 SPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRPDDAVKA 220
S + L V + QD + + FS +G ++ ++ N RGYGFV ++ +DA +A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 221 RKAFNGLLMQNKTLKVSHAL----------LNPELKPPTKPEADWNLYICNLPNELTL-Q 367
K + + L++ A N +K + + L I NLP + Q
Sbjct: 63 AKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQ 122
Query: 368 GLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNINGSTPPGFLHPLTV 526
L F++FG++ +I G AFV + + AE A+ ++NG+ G P+ V
Sbjct: 123 HLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDG--RPIAV 180
Query: 527 KYA 535
+A
Sbjct: 181 DWA 183
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Frame = +2
Query: 50 PEESPTKLIVNYIPE--VMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPD 205
P P L V + + V + LFS G+++SC L + ++GYGFV ++ P
Sbjct: 414 PTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPF 473
Query: 206 DAVKARKAFNGLLMQNKTLKVSHA 277
+AV+A NG+L K L V++A
Sbjct: 474 EAVQAINTLNGVLFGKKRLFVNYA 497
Score = 39.1 bits (87), Expect = 6e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Frame = +2
Query: 299 PPTKPEAD-WNLYICNLPNELT--LQGLHGLFAQFGRIINSRIAA--------GIAFVLY 445
P + P D NL++ NL + + Q L LF++FGRI + +A+ G FV +
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Query: 446 EHQYEAERAIQNING 490
H +EA +AI +NG
Sbjct: 470 SHPFEAVQAINTLNG 484
Score = 34.3 bits (75), Expect = 0.017
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Frame = +2
Query: 281 LNPELKPPTKPEADWNLYICNLPNELTLQGLHGLFAQFGRI-------------INSRIA 421
L+ + K TK + + ++Y+ NLP+ LH LF FG +S+
Sbjct: 7 LSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 422 AGIAFVLYEHQYEAERAIQNINGSTPPGFLHPLTVKY 532
AF+ +E++ A+ AI ++NGS+ G + L V+Y
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSFQG--NTLKVEY 100
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 40.7 bits (91), Expect = 2e-04
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Frame = +2
Query: 173 GYGFVEYTRPDDAVKARKAFNGLLMQNKTL--KVSH----ALLNPELKPPTKPEADWNLY 334
G+GFVE+ AV A A NG ++ L K+SH A + +KP+ +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGT-KIL 724
Query: 335 ICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNINGS 493
I NLP E T + + L +G++ + R+ A G AF + EA A++ + +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNT 784
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +2
Query: 71 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPDDAVKARKAF 232
L V + ++ + +++ FS +G+L +A ++GYGFV Y + A A +A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 233 NGLLMQNKTLKVSHA 277
N + NK + VS+A
Sbjct: 161 NNQFLMNKPITVSYA 175
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Frame = +2
Query: 299 PPTKPEADWN--LYICNLPNELTLQGLHGLFAQFG-----RIINSRIAAGIAFVLYEHQY 457
PP+ + N L+I NL ++T + ++ LF ++G R+ N+ G AFV+YE+
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQ 61
Query: 458 EAERAIQNING 490
+A RA + ++G
Sbjct: 62 DARRACEKLSG 72
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 36.7 bits (81), Expect = 0.003
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Frame = +2
Query: 14 SGR*LSGNNEYGPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RG 175
+G + NN + + + + +P D+ + S S K+I + R
Sbjct: 166 TGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRK 225
Query: 176 YGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHAL--------------LNPELKPPTKP 313
YGFV ++ + A G L Q + L++S A + P +P
Sbjct: 226 YGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQP 285
Query: 314 EADW--------NLYICNLPNELTLQGLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEA 463
D +++ L + L+ + L F FGRI+N +I G FV Y + A
Sbjct: 286 NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAA 345
Query: 464 ERAIQNINGS 493
E+AI + G+
Sbjct: 346 EKAINTMQGA 355
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +2
Query: 80 NYIPEVMTQDMMFSLFSTMGKLESCKL-----IANRGYGFVEYTRPDDAVKARKAFNGLL 244
N P V T+ ++++ F G++ S L +R Y FVE+ P+DA +A + N +
Sbjct: 12 NLAPSV-TESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSI 70
Query: 245 MQNKTLKVSHA 277
+ ++ ++VS A
Sbjct: 71 LCDRCIRVSPA 81
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 329 LYICNLPNELTLQGLHGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAERAIQNIN 487
+++ NL +T L+ F FG II+ + AFV ++ +A+ A++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 488 GS 493
S
Sbjct: 68 YS 69
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.004
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Frame = +2
Query: 167 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV-----SHALLNPELKP--PTKPEADW 325
+RG G V + +A+ A + + +TL+V +H + + P P +D
Sbjct: 222 SRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDC 281
Query: 326 NLYICNLPNELTLQGLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAERAIQNI 484
+Y+ NLP + + L LF G +I +RIA G V +E++ +A +I+ +
Sbjct: 282 -IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 485 NGSTPPGFLHPLTVKYA 535
NG G PL + YA
Sbjct: 341 NGYRYGG--RPLQLSYA 355
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +2
Query: 71 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARKAFN 235
+ V +P + + LF+ +G + ++ ++G+G V++ +DA + + N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 236 GLLMQNKTLKVSHA 277
G + L++S+A
Sbjct: 342 GYRYGGRPLQLSYA 355
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 80 NYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKA 220
++I + +T + + + G++ES K + NR GFV YT +A+KA
Sbjct: 505 SHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKA 551
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 317 ADWNLYICNLPNELTLQGLHGLFAQFGRIINSRIAA--GIAFVLYEHQYEAERAIQNIN 487
A N++I NLP+ + + F +FG+I + +I + IAFV + + +A + ++ ++
Sbjct: 297 ASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +2
Query: 71 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVK 217
+ + +P + + F GK+E K+++ + FV + DA+K
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIK 349
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.7 bits (76), Expect = 0.013
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +2
Query: 62 PTKLIVNYIPE--VMTQDMMFSLFSTMGKLESCKLIA------NRGYGFVEYTRPDDAVK 217
P+ L V + + + + + LFS G + S L ++GYGFV + + + AV+
Sbjct: 381 PSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVR 440
Query: 218 ARKAFNGLLMQNKTLKVSHA 277
A+ NG+++ K + V A
Sbjct: 441 AKDTLNGMMVGKKRIFVCFA 460
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.017
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +2
Query: 137 GKLESCKLIANRGYGFVEYTRPDDAVKARKAFN--GLLMQNKTLKVS---HA-LLNPELK 298
G L + + + + FV + P A + + N GL+++N+ LK+ H+ L +
Sbjct: 346 GLLHNIRYLQEKHICFVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWGKHSGPLPSNIA 405
Query: 299 PPTKPEADWNLYICNLPNELTLQGLHGLFAQFGRI--INSRIAAGIAFVLYEHQYEAERA 472
A N+YI N + LT++ L F +FG I +N AFV + A A
Sbjct: 406 LAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINA 465
Query: 473 IQNI 484
I I
Sbjct: 466 IDRI 469
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +2
Query: 86 IPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKA 220
+P +T+D + G ++ K++ R FV + A+KA
Sbjct: 213 LPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKA 257
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.1 bits (72), Expect = 0.039
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 68 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR-----GYGFVEYTRPDDAVKARKAF 232
+L V + + + ++ FS L K++ +R G+GFV + D +KA +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 233 NGLLMQNKTLKVSHALLNPELKP 301
NG + ++ +K+S A ++KP
Sbjct: 91 NGKYIGSRPVKLSRA--TSDVKP 111
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.068
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 47 GPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLI------ANRGYGFVEYTRPDD 208
G E L V+ I M +D + +FS G + +++ A+RG+GF+ ++ ++
Sbjct: 95 GSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEE 154
Query: 209 AVKARKAFNGLLMQNKTLKVSHA 277
A A N + L V A
Sbjct: 155 ATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.068
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Frame = +2
Query: 65 TKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARK 226
T L + + +T+ + +++T+GK KLI NR GY FVE+ P +A A
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 227 AFNGLLM-QNKTLKVSHALLNPELKPPTKPEADWNLYICNLPNELTLQGLHGLFA----- 388
N + N K++ A + +++++++ +L + ++ LFA
Sbjct: 153 MNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 389 -QFGRII---NSRIAAGIAFVLYEHQYEAERAIQNING 490
+ +I+ + ++ G FV + + + + A+ + G
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Score = 29.1 bits (62), Expect = 0.63
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Frame = +2
Query: 167 NRGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV--------SHALLNPELKPPTKP--- 313
+RGYGFV +T +D A G + ++ ++V +H + P + P
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVG 286
Query: 314 -------------EADWNLYICNLPNELTLQGLHGLFAQFGRIINSRI--AAGIAFVLYE 448
A+ +++ L ++ + L LF FG I+ +I G FV +
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 449 HQYEAERAIQNING 490
++ AE AI + G
Sbjct: 347 NRQSAEIAINQLQG 360
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.9 bits (69), Expect = 0.090
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +2
Query: 14 SGR*LSGNNEYGPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESC------KLIANRG 175
S R S + PEE ++V + +T++ + +F G ++ K N+G
Sbjct: 82 SNRSYSSSLSRSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKG 141
Query: 176 YGFVEYTRPDDAVKARKAFNGLLMQNKTLKVS 271
Y ++EY D A A N + + L VS
Sbjct: 142 YCYIEYVYHDQAANAVDKMNNAELDGEELFVS 173
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +2
Query: 71 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAF 232
+IV + T++ + LF+ G +++ L +R GY +EY + A KA
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 233 NGLLMQNKTLKVSHALLNPELKPP 304
N L+ K L+V A L P + P
Sbjct: 72 NLSLLDEK-LEVDFAFLEPPERAP 94
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.12
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 416 IAAGIAFVLYEHQYEAERAIQNINGST 496
+ +GIAFV + +Q + ++AI+ +NG T
Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNGKT 113
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 170 RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPE 292
RG+GFV + +D +A + NG + + TL V A+ +
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 125 FSTMGKLESCKLIAN---RGYGFVEYTRPDDAVKARKAFNGLLMQNKTLKVSHALLNPEL 295
F G L K++ + R Y FV++ DDA KA ++ + +++ A +N +
Sbjct: 103 FQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTI 162
Query: 296 KPPTKP 313
+ + P
Sbjct: 163 RISSAP 168
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +2
Query: 50 PEESPTKLIVNYIPEV-MTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARK 226
P P + V + V T ++ LFS GK+ CK+I + R D A
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 227 AFNGLLM---QNKTLKVSHALLNP 289
A G Q K L+V L P
Sbjct: 420 AVCGKTRSPHQKKPLRVEFRQLRP 443
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Frame = +2
Query: 41 EYGPEESPTKLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN------RGYGFVEYTRP 202
E G + PT ++V IP + +D + F +G + RG F + RP
Sbjct: 194 EPGEDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRP 253
Query: 203 DDAVKARKAFNGLLMQNKTLKV 268
++A + NG + + L+V
Sbjct: 254 EEAQVVVQTLNGYEINGRRLRV 275
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 71 LIVNYIPEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKARKAFNGLLMQ 250
L + I + + ++ S+F G ++S L N +GF++ R D A KA+ A +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFA 467
Query: 251 NKTLK 265
+ T++
Sbjct: 468 DTTIR 472
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +2
Query: 68 KLIVNYIPEVMTQDMMFSLFSTMGKLESCKLIAN-----RGYGFVEYTRPDDAVKARKAF 232
+L V+ I +T + + ++F G +E L + +G+G+++Y P A A +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 233 NGLLMQNKTLKV 268
NG + + ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 29.1 bits (62), Expect = 0.63
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +2
Query: 65 TKLIVNYIPEVMTQDMMFSLF-STMGKLESCKLI-----ANRGYGFVEYTRPDDAVKARK 226
+K+IV+ +P +T+ + LF ++G + L ++G + ++RP DA +A +
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114
Query: 227 AFNGLLMQNKTLKVSHALLNP 289
+ G L+ +L+P
Sbjct: 115 QYEGRLVDGTRKMKVEIILDP 135
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 47 GPEESPTKLIVNYI-PEVMTQDMMFSLFSTMGKLESCKLIANRGYGFVEYTRPDDAVKAR 223
G S ++L + ++ + +++ ++ +F G L L AN YGFV++ +D +A
Sbjct: 357 GQFPSASRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKAN--YGFVQFFTNEDCARAL 414
Query: 224 KAFNGLLMQNKTL 262
A G ++ + L
Sbjct: 415 NAEQGNFVRGQKL 427
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 125 FSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNKTLKV 268
F+ G +E +++ N+ GY FV + R D A KA GL++ + + V
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 98 MTQDMMFSL-FSTMGKLESCKLIANR------GYGFVEYTRPDDAVKARKAFNGLLMQNK 256
+TQD L FS GK+ SC++I ++ Y F+E+ + KA +L+ +
Sbjct: 254 VTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDS 313
Query: 257 TLKV 268
+ V
Sbjct: 314 RIHV 317
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 218 ARKAFNGLLMQNKTLKVSHALLNPE-LKPPTK----PEADWNLYICNLPNEL 358
ARKA + + NK + + A L PE + T P + +Y N+PNEL
Sbjct: 300 ARKALQSIDLSNKKVCMIAATLRPETMYGQTNCYVGPNITYGIYESNVPNEL 351
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 147 SNLPIVENKENIISWVMTSGM*LTMSLVGDSSGPYSLFPDNY 22
SN+P + EN+ W+ T+G+ T S + + +FP Y
Sbjct: 270 SNMPDLSTMENLQVWMRTAGL-PTFSKLAMRNDNDDIFPGTY 310
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 329 LYICNLPNELTLQGLHGLFAQFGRI 403
LY+ NLP + +H LF+ +G +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 62 PTKLI-VNYIPEVMTQDMMFSLFSTMGKLES 151
P++ + VN+ ++Q+ ++S+F T GKL S
Sbjct: 161 PSRTVDVNFEGPPLSQERLYSIFRTYGKLRS 191
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 167 NRGYGFVEYTRPDDAVKARKAFNG 238
++GYG+V++ P +A KA A NG
Sbjct: 303 SKGYGYVDFETP-EAAKAAVAANG 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,069
Number of Sequences: 5004
Number of extensions: 49927
Number of successful extensions: 190
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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