Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1809
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.5  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 172 WFLGFALLCLIVGLLTEL 225
           W+  F ++CLI G +  +
Sbjct: 285 WYSPFGIMCLIAGKIMSI 302


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 284 TLNIHAI*ITSAT*CSFITVNSVNN 210
           TLNI ++ I     CS  ++ SVN+
Sbjct: 389 TLNIPSVKIDEDQKCSIESITSVNS 413


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 144 LSFVCYVNILVFGLCITLFDCRIVN*VNCYERTSRCTGYL 263
           ++ VC+V+ L+   CIT     +   ++ Y  +  C  +L
Sbjct: 419 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFL 458


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 144 LSFVCYVNILVFGLCITLFDCRIVN*VNCYERTSRCTGYL 263
           ++ VC+V+ L+   CIT     +   ++ Y  +  C  +L
Sbjct: 472 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFL 511


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 471 VGNNFYTNRYFVLY 430
           +GNN     YF+LY
Sbjct: 376 IGNNENEGTYFILY 389


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 471 VGNNFYTNRYFVLY 430
           +GNN     YF+LY
Sbjct: 376 IGNNENEGTYFILY 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,732
Number of Sequences: 438
Number of extensions: 2680
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)