Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1805
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.87 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = +2

Query: 356 QRQPGVESSAYSGHVQLGAPGTRGVGSRGRPNPVPGLAREELSRQQNAPARPG 514
           +RQ G + S Y G           V +   P+P P +A    S   ++P   G
Sbjct: 481 ERQNGRKDSGYDGAASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKG 533


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 341 GFCENQRQPGVESS 382
           GFC +Q QP V S+
Sbjct: 71  GFCNSQVQPSVAST 84


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 341 GFCENQRQPGVESS 382
           GFC +Q QP V S+
Sbjct: 71  GFCNSQVQPSVAST 84


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 86  QVKKRRKHHEEGCQI--GSMGGSKESVLRRRTQDYE 187
           +++K+  H  +      G +GG + ++L RRT   +
Sbjct: 47  KIEKQNLHESDDLHESDGRVGGKRRNILLRRTDSMD 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,051
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)