Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1804
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 192 PGGPAGTPPLSASPS 148
           PGGP G PP S +PS
Sbjct: 48  PGGPPGAPP-SQNPS 61



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/62 (19%), Positives = 27/62 (43%)
 Frame = +3

Query: 75  SYATESVTYFERMKLKHNITTDPVN*EKQREVEYQPDLLAVSTQYTKIAYDVFKQAVVRL 254
           S+  +   Y ++ + +H+  +   +   Q    Y   L     Q+ ++     +QA+ +L
Sbjct: 90  SFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQQL 149

Query: 255 QE 260
           QE
Sbjct: 150 QE 151


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 234 KQAVVRLQESKAYVIATRTSQPF 302
           KQ + RL +   YV+  RT  PF
Sbjct: 226 KQFMPRLYDLLGYVMPDRTFAPF 248


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 VGAVATHLGAQIWMTLVSGI 449
           VGA ATH  + IW  +  G+
Sbjct: 338 VGASATHGASGIWGIIAIGL 357


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 515 LRVQRLHELAGTPGVPPHTVPYG 583
           ++ ++ H++A    VP H  PYG
Sbjct: 61  MKWKKEHKMASMNIVPYHMSPYG 83


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 378 RALYVGAVATHLGAQIWMTLVSGIVLYFS 464
           R LYV   +T+     W+  ++G + YFS
Sbjct: 280 RLLYVYEDSTYDDINQWVYPLTGCLYYFS 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,028
Number of Sequences: 438
Number of extensions: 3058
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)