Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1802
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated...    33   1.2  
U62583-1|AAB42010.1|  873|Homo sapiens Prt1 homolog protein.           30   6.4  

>DQ335469-1|ABC59821.1| 5005|Homo sapiens fragile site-associated
            protein protein.
          Length = 5005

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 263  IRCYLRMYIVFFNIFHWHPSHRTVKSNGKTARNQPAAITATTSEHS 400
            + CY + Y+  F + +W   H T K   K++ ++P  +   TSE S
Sbjct: 1500 MNCY-QTYLTQFQVINWSVKHPTNKRTSKSSLHRPLDLDTPTSEES 1544


>U62583-1|AAB42010.1|  873|Homo sapiens Prt1 homolog protein.
          Length = 873

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 278 VNSTLSLC-VSKFCEVIWVLPKKHIFF*V-PLTLLWGV 171
           V    SLC ++  C+  W+LP +HIF    P  L WG+
Sbjct: 836 VTPASSLCSLALDCDCAWILPLRHIFVPFSPWCLQWGI 873


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,542,444
Number of Sequences: 237096
Number of extensions: 2276489
Number of successful extensions: 7448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7448
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)