Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1802
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 411 GGTFDFVNAKTILTAVKTHYSPG-ICSVDLV 500
           GGT   +N   ++  +K  Y PG IC   ++
Sbjct: 163 GGTNTGINEFPMMAGIKRTYEPGMICGATII 193


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 117 IWFKRSLSL*LKFVLFGISIDSSMFLIL 34
           IW   S+     + LF +++   +FLIL
Sbjct: 58  IWRNPSMQTPTNYYLFNLAVSDLLFLIL 85


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 646 IQPNILCERIVRWTNKK 596
           +Q    C R ++WTN++
Sbjct: 468 LQDREYCPRYIKWTNRE 484


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 555 CILSLKNVFPTKQYIKIIIPNPQNI 481
           CIL  K ++  KQ   +IIP   N+
Sbjct: 39  CILKPKPLWTGKQISSLIIPGNVNM 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,978
Number of Sequences: 438
Number of extensions: 4783
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)