Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1801
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 481 NKLLCRN*EHFYWRSRYKNKL*NCKVRGNRRLGLATEMK 597
           N L C   + F+ RS  KN +  CK   N  + +    K
Sbjct: 200 NALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRK 238


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +3

Query: 447  ECQEGRSQIKNKQIAMQKLRTLLLEKQIQEQALKLQSERKSQVGSGNRNEKIRTYN 614
            E Q   + ++ +Q   Q+ +    ++Q Q+Q  + Q+  +  VG+G       T N
Sbjct: 1200 EQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSN 1255


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 674 FEIMECPTTISMFCHSILREVV 609
           F++ ECP     + H++L  V+
Sbjct: 151 FDVQECPLIFESWTHNVLDMVL 172


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 225 VHRVQRIPATEKGGRIHTSTVTVAILPQPSEIE 323
           V    ++ ++   GR+H S  T++ L    E+E
Sbjct: 393 VELANKMESSGMAGRVHISNATLSFLNGEFEVE 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,150
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)