Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1771
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              30   0.017
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.21 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.28 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.86 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 378 SMMFKHFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDPEFESILSIVDPNRDGQVSL 557
           S+MF H+D++ +G L   E +    A   DL   EE         ++S  D + DG++++
Sbjct: 239 SIMFSHYDRNNNGNLEREELEQF--AENEDL---EELCRGCNLGHMISYDDTDGDGKLNV 293

Query: 558 QE-YMAF 575
            E YMAF
Sbjct: 294 NEFYMAF 300



 Score = 25.4 bits (53), Expect = 0.49
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 508 SNSGSGCPSSTMGRSYPRARRHDLNSWWLRRPDRSLSKCLNIIENSFRASSLTPEWFLAC 329
           S+S S   S T+  S  R+  H+ +  +L    RS+  C +      +   L+P   +A 
Sbjct: 46  SSSNSDSLSMTIPPSIDRSSIHEES--YLAESSRSIDPCASKYCGIGKECELSPNSTIAV 103

Query: 328 ICCSRLCCMR 299
             C R C  R
Sbjct: 104 CVCMRKCPRR 113


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 236  LHGAQHRGTSAAVGPAGPALYAHAAQPRAADTSQEP 343
            LHG +   T A +   G A+YA    P    +SQ P
Sbjct: 1253 LHGLKVIPTPAGLKTTGAAVYARVIAPTTITSSQSP 1288


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 375 FSMMFKHFDKDRSGRLNHHEFKSCLRALGYDLPMVEEGQPDPEFESILSIVDPNRD 542
           + ++   F KD S R+ HH F     A  Y+L  ++    D  F   LS VD + D
Sbjct: 333 YGLLIYDFFKDSSFRIQHHFFYPDPLASKYELHGLKFQWTDGIFGMALSPVDIHDD 388


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 267  QQWDQLDQLSMRMQHNLEQQIQARNHSGV 353
            QQ  Q  Q   + Q   +QQ QAR   GV
Sbjct: 1214 QQQQQQQQQQQQQQQQQQQQHQAREREGV 1242


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 264 AQQWDQLDQLSMRMQHNLEQQIQARNHSGVSED 362
           AQQ  Q  Q   + Q   +QQ Q + H  + E+
Sbjct: 437 AQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEE 469


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 433 SSSRVCEPSGTTCPWL 480
           +S+ + E +GT+C WL
Sbjct: 19  ASTILSESAGTSCKWL 34


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 165  GRVLRTLVGAASPTVVPGNPCPP 97
            G V R  VG+A    V G+P PP
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPP 1860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,535
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)