Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1738
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 410  AGTLAVASAGPTPSLCRRSRPRL 342
            +G  A+ASA P P+     R RL
Sbjct: 1043 SGAAAMASAAPMPACFDSDRERL 1065


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 592 WHVRLHQIDPESDLATDLRELHIPNILL 675
           W++   ++DP+SD    +RE  + N +L
Sbjct: 810 WNMNNKRLDPKSDSRYTIREEILANGVL 837


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 431 SEDAPGLAGTLAVASAGPTP 372
           +E    LAGT   A+A PTP
Sbjct: 35  AETPEHLAGTSTTAAATPTP 54


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 12  LKQATARDVTTDLHTTNALAAVKSYIKIFV 101
           L   T    TT+  TT +    + +IK+FV
Sbjct: 378 LVPTTTASPTTEPSTTTSTTISQKHIKVFV 407


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 591 VAREAAPDRSRE*SCHGPTRTAHSEH 668
           V R      +R  SC G T T +S+H
Sbjct: 365 VIRNFNESENRRNSCLGSTETYYSKH 390


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 361  RHRDGVGP--AEATASVPASPGASSLVK 438
            R R+GVG   AE +A    S GA+ + K
Sbjct: 1237 REREGVGAGIAETSAGTSNSRGAAQMSK 1264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,199
Number of Sequences: 438
Number of extensions: 4291
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)