Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1736
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 321 LFLVKTVLVHN*SKGYINRDLIKTNKFYR 235
           LF++  VL+H     ++ +D+  T+  YR
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYR 39


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 545 FEPFPEIKINGSIAEAINRM*ILFWYLIA 459
           F PF   + + S+AE ++R  +LF+ L++
Sbjct: 298 FVPFSIERSSQSVAEVMDRNGVLFFGLLS 326


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 296 TKTVFTKNSGLSNMQLSSIKISKVQ 370
           +KTV   N G   +Q+++ ++ K++
Sbjct: 97  SKTVILSNKGPEGIQINATELQKIK 121


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +1

Query: 550 AYNNCSTICYCYTISTINL 606
           AY+NC T+C    +  + +
Sbjct: 51  AYDNCITVCNMENVDPLGI 69


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 449 WWG*LSNTKKGFTC 490
           W G LS TK GF C
Sbjct: 72  WIGELSATKFGFPC 85


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +2

Query: 296 TKTVFTKNSGLSNMQLSSIKISKVQ 370
           +KT+   N G   +Q+++ ++ K++
Sbjct: 97  SKTIILSNKGPEGIQINATELQKIK 121


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 449 WWG*LSNTKKGFTC 490
           W G LS TK GF C
Sbjct: 72  WIGELSATKFGFPC 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,858
Number of Sequences: 438
Number of extensions: 3675
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)