Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1735
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    29   0.058
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 608 VMEVTKIMLLSHCIQKQTYPQMCYTEQVMRH 516
           V++ TK++ +  C    TYP + Y   + RH
Sbjct: 221 VIKATKVLKMYACCPNDTYPMIVYEFSISRH 251


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 231 GKYLIVDQGQLHV 269
           GKYL++  G+LH+
Sbjct: 155 GKYLVLPSGELHI 167


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 490 CRTDQKFSSCRITCSV*HICGYV 558
           C T QKFS C I     HI  Y+
Sbjct: 111 CLTAQKFSRCVIDYVKFHITQYM 133


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +2

Query: 266 CP---LICLPPVSGTADIYYKQVMGLASRGVRVISAEAPPYWNLKEWCDG 406
           CP   L  +PP+SG+A   + Q M L        + E  P W    W  G
Sbjct: 383 CPADWLWIVPPISGSATPVFHQEMALYYLKPSYDAQE--PAWKTHVWKKG 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,339
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)