Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1722
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 528 KDKTETKKRKRPQSNSIDEPIETKKTKPDPQYLLSS 635
           KD    KK+      S+D+ +E  K KP+ +  +S+
Sbjct: 234 KDGGTVKKKVNYVYRSVDQVLEDGKLKPNKKVRISN 269


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 294 PSEEQEMYNAKETEDAVNSIVNIDKLYTPLKDTAKAQCYEIFNS 425
           P+++    +AK      N+I  +++   PL+ TA      IFNS
Sbjct: 508 PADQPLDLSAKPKNSQDNNISLLEQQKIPLRMTAGIDPKSIFNS 551


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 507 ERDRTDSKDKTETKKRKRPQ 566
           ER +  S+D+TE ++ + P+
Sbjct: 61  ERSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 507 ERDRTDSKDKTETKKRKRPQ 566
           ER +  S+D+TE ++ + P+
Sbjct: 61  ERSKERSRDRTERERSREPK 80


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 512 PFYNYFRHSDFMASFWTANFERSIQAR 432
           PF   F  +DF  +FW     +  ++R
Sbjct: 356 PFIYAFYSADFRLAFWRLTCRKCFKSR 382


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 507 ERDRTDSKDKTETKKRKRPQ 566
           ER +  S+D+TE ++ + P+
Sbjct: 294 ERSKERSRDRTERERSREPK 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,351
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)