Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1718
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   7.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   7.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
 Frame = +3

Query: 537 WRG--ALVPHPAAPWSTGWPTD 596
           W G   L P P  PW  GW  +
Sbjct: 196 WHGDNMLEPSPKTPWYKGWKVE 217


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 354 EHFVQRQSCLNTFATTWGYMPLL 286
           +H +QRQ   N     WG++ ++
Sbjct: 462 QHHIQRQDEFNAEDQDWGFVAMV 484


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRSRVYPQEEIS 218
           YAT+S    SR H FQ +  +   E S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYSRERS 236


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRSRVYPQEEIS 218
           YAT+S    SR H FQ +  +   E S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYSRERS 236


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRSRVYPQEEIS 218
           YAT+S    SR H FQ +  +   E S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYSRERS 236


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRSRVYPQEEIS 218
           YAT+S    SR H FQ +  +   E S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYSRERS 236


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRSRVYPQEEIS 218
           YAT+S    SR H FQ +  +   E S
Sbjct: 199 YATSSNSLRSRTHGFQHTSSHYSRERS 225


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRSRVYPQEEIS 218
           YAT+S    SR H FQ +  +   E S
Sbjct: 210 YATSSNSLRSRTHGFQHTSSHYSRERS 236


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +2

Query: 539 ARCTSAAPGSTMEYRLAHRLL 601
           A+C    PG +++ R+A+R++
Sbjct: 66  AKCEFLNPGGSVKDRIAYRMI 86


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 298 YATASIGTTSRPHTFQRS 245
           YAT+S    SR H FQ +
Sbjct: 210 YATSSNSLRSRTHDFQHT 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,833
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)