Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1709
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.89 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.3  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 119 VLRDGVILCKLANKLAPGSVKKIQEKGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLF 298
           + R+ V+L  L   L   SV  IQ+ GT F     ++RF      Y  P +E  +T  + 
Sbjct: 1   MFREFVLLASLLY-LGNESVHGIQKWGTQFGQAPLLERFFWRTLDYAYP-DEASKTMAMM 58

Query: 299 ERRNIPQVTL 328
           +   IP+  L
Sbjct: 59  KGEYIPENAL 68


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 579 TDINVENIGKNLEAIYMWRVL 517
           TDI+  N+  +L+ IY W+ +
Sbjct: 18  TDIHSRNLTNSLKVIYEWKYI 38


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 429 KNNFGPTTLNLTSKWASIRAPPSPVMVA 512
           + NF      L  +W +   P SP++VA
Sbjct: 430 EENFKDAKKYLPERWTTPTTPHSPLLVA 457


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 551 FPIFSTLISVFVHGRI 598
           FP+   +I+V +HG++
Sbjct: 8   FPVLFVIINVLLHGQV 23


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 125 RDGVILCKLANKLAPGSVKKIQEK 196
           R+G  LC+ +N +  G  K +Q K
Sbjct: 780 REGFYLCQASNGIGSGIGKVVQLK 803


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 125 RDGVILCKLANKLAPGSVKKIQEK 196
           R+G  LC+ +N +  G  K +Q K
Sbjct: 776 REGFYLCQASNGIGSGIGKVVQLK 799


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 399 WLIRTNVPSRKNNFGPTTLNLTSKWASIRAPPSPV 503
           WL ++ VP+R +    T L + ++ + I A   PV
Sbjct: 264 WLDQSAVPARVSLGVTTLLTMATQTSGINASLPPV 298


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 399 WLIRTNVPSRKNNFGPTTLNLTSKWASIRAPPSPV 503
           WL ++ VP+R +    T L + ++ + I A   PV
Sbjct: 264 WLDQSAVPARVSLGVTTLLTMATQTSGINASLPPV 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,921
Number of Sequences: 438
Number of extensions: 5431
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)