Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1706
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              25   0.87 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.2  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   3.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   8.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 631 SRTTTTHARLWTPDPTNTSRVPDSPT 554
           S TTT  AR W  D  N   VP   T
Sbjct: 109 SFTTTVSARFWLMDCRNIGAVPKMAT 134


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 587 NQHQPSPGLAYSRMYSVL 534
           N+ +P+PG  ++R+ SVL
Sbjct: 514 NRRRPNPGTVFARLLSVL 531


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 37  RLLKTTMGKISLFFLALIASSVMALYRVPLHRMKTA 144
           R+++  +GK+ +  +    + V++LY  P+   + A
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAA 111


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 316 SNLWVPSKKCHYTNIAC 366
           SN + P   CH  +IAC
Sbjct: 354 SNGYTPVLDCHTAHIAC 370


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 316 SNLWVPSKKCHYTNIAC 366
           SN + P   CH  +IAC
Sbjct: 65  SNGYTPVLDCHTAHIAC 81


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 601 WTPDPTNTSRVPDSPTHAC 545
           W+PDP    R+ ++ ++ C
Sbjct: 201 WSPDPAINRRLKETYSNMC 219


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 601 WTPDPTNTSRVPDSPTHAC 545
           W+PDP    R+ ++ ++ C
Sbjct: 201 WSPDPAINRRLKETYSNMC 219


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 601 WTPDPTNTSRVPDSPTHAC 545
           W+PDP    R+ ++ ++ C
Sbjct: 201 WSPDPAINRRLKETYSNMC 219


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 316 SNLWVPSKKCHYTNIAC 366
           SN + P   CH  +IAC
Sbjct: 354 SNGYTPVLDCHTAHIAC 370


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 58  GKISLFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPL 228
           GK+++    +  S + ++  V L +          VG  +E+   K DVTG  P PL
Sbjct: 289 GKLNVNEFYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEI---KCDVTGTPPPPL 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,173
Number of Sequences: 438
Number of extensions: 4922
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)