Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1691
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.7  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   6.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 60  ITSDEVREVIDNLQPKKAPGSDGIATRVKTLTSPTDNNVATILNAAMT 203
           +TS  +RE  ++ +  +      +   V  LT+P++  VA  L A ++
Sbjct: 46  VTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSNEVVAVALGALLS 93


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 252 HKPGKPNNETASY 290
           HK  +PN+E A+Y
Sbjct: 316 HKTEEPNDEVATY 328


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 326 NFAYRWEETNRSVTSGF 276
           +F  RW     S+TS F
Sbjct: 6   HFCLRWNNYQSSITSAF 22


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 326 NFAYRWEETNRSVTSGF 276
           +F  RW     S+TS F
Sbjct: 6   HFCLRWNNYQSSITSAF 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,401
Number of Sequences: 438
Number of extensions: 2061
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)