Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1668
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +3

Query: 453 RNHRQPPYFYKT-----K*TNRHHHNMLNKLKSSY 542
           R   QP YF+ T         RH   +LN+L SSY
Sbjct: 32  RTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSY 66


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +3

Query: 453 RNHRQPPYFYKT-----K*TNRHHHNMLNKLKSSY 542
           R   QP YF+ T         RH   +LN+L SSY
Sbjct: 32  RTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSY 66


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 610 WLNRKAEGDRLTQG 569
           WLNR+A  DR++ G
Sbjct: 236 WLNREATADRVSLG 249


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 426 KNNL--IIDLPRNHRQPPYFYKTK*TNRHHHNMLNKLKSSY 542
           K NL  I+DL  NH    + +     N  ++N  NK K  Y
Sbjct: 109 KQNLKVILDLVPNHTSDQHKWFQMSINNTNNNNTNKYKDYY 149


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 388 STSTHLSNKNKFKKIT 435
           STS  LSNK +F+  T
Sbjct: 243 STSPELSNKQRFEYFT 258


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 283 YYRTGI*NSCLKLGGGIY 336
           YY T   ++CL  GG  Y
Sbjct: 126 YYTTNESHACLSTGGSCY 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,939
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)