Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1663
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)                42   4e-04
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             29   2.8  
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          28   8.5  
SB_5809| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)
          Length = 593

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/89 (25%), Positives = 43/89 (48%)
 Frame = +3

Query: 405 AFIRFTNRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVIN 584
           ++I   N++ RPV V++      +  +      +  ++NT+ +H W   D AT    +I 
Sbjct: 250 SYINIVNKAERPVNVFYIS-GAAEVLFSRFGYDEHQNVNTYTSHKWVARDEATNKTLLIG 308

Query: 585 NKEIFRPPPIVGQVLFRTNWNITVPVRQL 671
            KE++ PP        R + +ITVP + +
Sbjct: 309 GKEVYSPPANTNN--DRLSVHITVPSKSI 335


>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 481

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -1

Query: 331 SVVPTPYILVTLLCQSKALAVG*HICVYIKNNFTHFRTFPGKVL-VCQGGSSE*QLCVLF 155
           SV  TPY++V LL  S  + +  ++  ++   F    +F   ++ V         L  LF
Sbjct: 301 SVAWTPYVIVHLLQASPEITLPTNVTTFV-TLFAAMHSFYNPIIYVTMNRKFRSDLYKLF 359

Query: 154 PI-SDVLIYNGCVCCCYRKR 98
           P+   V    G  CCC R+R
Sbjct: 360 PVLRRVGKCCGVCCCCCRRR 379


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 41  DLKTFFLSCNNEKKV*KLTSFPITATHTAIVNQYI*NRKQNTELS 175
           DLK  F + N+   + KL  + IT     ++  Y+ NRKQ  +L+
Sbjct: 608 DLKKAFDTVNHGVLLRKLEMYSITGNALLLLQSYLTNRKQKCQLN 652


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +3

Query: 411 IRFTNRSSRPVAVWWRDFQGRKQHYINLDPTDFFDINTFVTHPWEFSDAATTDVFVINNK 590
           ++F N++ R V + W + +G ++    L     + +NT   H W   D    D  +  N 
Sbjct: 341 VKFINQTGRKVRLEWINTKGHRESKKELRKGRCWRVNTMEGHCWLCCDPRDEDDLLFLNF 400

Query: 591 EIFRPPPIVGQ 623
             F  P    Q
Sbjct: 401 GSFYWPTRTNQ 411


>SB_5809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 SSRPVAVWWRDFQGRKQHYINLDPT 503
           S  P+A+ W+++      Y+N DPT
Sbjct: 74  SDSPLAILWKEYGHADNRYLNSDPT 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,372,653
Number of Sequences: 59808
Number of extensions: 494542
Number of successful extensions: 1073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)