Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1659
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       31   0.011
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       28   0.079
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 457 PQAIIIEPSRELAEQTCTQFTKFKKYLENPKIRELLVVGGINVKDQ 594
           PQ +I+ P+REL  Q   Q  KF     N  ++ ++  GG +V  Q
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSL---NSILKTVVAYGGTSVMHQ 316


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 0.079
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 408 ILLDVFFGCLTDCYV-SVWWWV 346
           I++ VFF C T  YV S+W+W+
Sbjct: 264 IIIAVFFICWTPYYVMSLWYWI 285


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 355  PNGYIAISQAPKENVKQNVIAAVASTDIKPVNNAPQAIIIEPSRELAEQTCTQFTKFKKY 534
            P  YI + + P+ NV+Q+++    ST       A  A  +     L   TC Q    KK+
Sbjct: 900  PKLYIILIR-PERNVRQSMMPTRYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKH 958

Query: 535  L 537
            +
Sbjct: 959  I 959


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 1   QESARGTDEGLCRVGWSTQAAK 66
           +E   G  EG CRV W   A +
Sbjct: 359 REKIYGALEGYCRVAWPDDAGR 380


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 1   QESARGTDEGLCRVGWSTQAAK 66
           +E   G  EG CRV W   A +
Sbjct: 359 REKIYGALEGYCRVAWPDDAGR 380


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 245 ATPKSSPFLEYRISPLFKFRKQPMTSFI 162
           AT  SSP L  R SP F     P  S +
Sbjct: 912 ATAASSPGLLERASPAFSGTSSPTNSLV 939


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 381 LTDCYVSVWWWVLK 340
           LTD Y+SV W ++K
Sbjct: 193 LTDYYISVEWDIIK 206


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 275 SDFLDESRLKATPKSSPFLEYR 210
           SD+ D+S  K  PKSS + + R
Sbjct: 202 SDYTDKSNEKKIPKSSGWRKLR 223


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 112 LYHQIHSLACQFQDPALPLV*TSRHGISPHQCLVPI 5
           +Y+   +  C F+  A       RH +S H+C + +
Sbjct: 530 IYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRV 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,711
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)