Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1653
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.23 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.23 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   3.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 382 PVLTPRSPHARRSRHKTSDKDFCNSLTERGSVGCLQTSV 498
           PV   ++ H  R   +    D+CNS T  G   CL+  +
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDL 235


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 382 PVLTPRSPHARRSRHKTSDKDFCNSLTERGSVGCLQTSV 498
           PV   ++ H  R   +    D+CNS T  G   CL+  +
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDL 235


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 382 PVLTPRSPHARRSRHKTSDKDFCNSLTER 468
           P L    PH   ++ K+ +   CN  TE+
Sbjct: 46  PSLLTSQPHQDHNKEKSKNNHHCNQDTEK 74


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 157 NHVSNLFGIVTSHLQHVTETI 95
           NH+ N+F I+ S  + +T  I
Sbjct: 57  NHIQNIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 157 NHVSNLFGIVTSHLQHVTETI 95
           NH+ N+F I+ S  + +T  I
Sbjct: 40  NHIQNIFKIIKSTNEKITRYI 60


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 330 SAAPPSNWKAASPAAGTSDASSSSPAKY 247
           SAA  ++   + P  G+S  S SSP+ +
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPSSF 99


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 182 IEDLQTHEKMEIYKMAYDIIEQYFA 256
           I   +   K EI   A D +EQYF+
Sbjct: 54  IHGTEPRSKEEILLHAKDFLEQYFS 78


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 149 NMIEECGGIDKIEDLQTHEKME 214
           ++I +CGGIDK    +T EK E
Sbjct: 26  HLIYKCGGIDK----RTIEKFE 43


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = +3

Query: 456 PHRTRVCRLFTDKCTPSFA*IIFTFNV 536
           PH T++C +  +  + +   ++F +N+
Sbjct: 140 PHDTQICSMMIESLSHTTQDLVFIWNM 166


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 149 NMIEECGGIDKIEDLQTHEKME 214
           ++I +CGGIDK    +T EK E
Sbjct: 26  HLIYKCGGIDK----RTIEKFE 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,593
Number of Sequences: 438
Number of extensions: 2526
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)