Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1652
(732 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 73 2e-15
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 5.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 22 6.8
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 6.8
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 9.0
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 9.0
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 9.0
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 9.0
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 73.3 bits (172), Expect = 2e-15
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 5/175 (2%)
Frame = +1
Query: 91 IVNIIKHPSYNPPKK----YYDIALMELDKDVFFSKYVQPACL-WPHFDLSSLGKKASAT 255
I +I HP Y+ +K DIAL++ +KD+ F V PACL + HF S G +
Sbjct: 236 INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL 295
Query: 256 GWGVVDARSTDISPELQAIVIDLIDTPQCQQLLETSCNRHWCGVEDHQLCAGKLAGGVDA 435
GWG +S LQ +++ L + C +++ + + +CA A G DA
Sbjct: 296 GWGHTSFNGM-LSHILQKTTLNM--------LTQVECYKYYGNIMVNAMCA--YAKGKDA 344
Query: 436 CQGDSGGPLQVEISLPTSSQGKIYCIIGVTSFGIGCALPELPGIYTRVSSFIDWI 600
CQ DSGGP+ L + + K IG+ S+G C + P T+V S+IDWI
Sbjct: 345 CQMDSGGPV-----LWQNPRTKRLVNIGIISWGAECG--KYPNGNTKVGSYIDWI 392
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 407 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 511
LGS+ M + + VL+ L +F HR RY++
Sbjct: 257 LGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 407 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 511
LGS+ M + + VL+ L +F HR RY++
Sbjct: 257 LGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 407 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 511
LGS+ M + + VL+ L +F HR RY++
Sbjct: 257 LGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 5.2
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 609 ILFDPINEARHSRVYPGQFRESTADPE*RHADYTIYLALRRCRKRYFNLERTSRVTLTCI 430
IL D N + EST D + T L+ +R++++ T+ VTLT +
Sbjct: 197 ILDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLRRHYSMNSTTYVTLTIV 256
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 407 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 511
+GS+ M + + VL+ L +F HR RY++
Sbjct: 257 IGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 407 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 511
+GS+ M + + VL+ L +F HR RY++
Sbjct: 257 IGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 407 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 511
+GS+ M + + VL+ L +F HR RY++
Sbjct: 257 IGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 439 QGDSGGPLQVEISLPTSSQG 498
Q D GGPL ++ + T+ G
Sbjct: 441 QSDDGGPLSLKNKVETTHSG 460
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 6.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 514 IGVTSFGIGCALPELPGIYTRVSS 585
IG F C++ LPGI + S+
Sbjct: 677 IGGNPFNCNCSMDWLPGINNQTST 700
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 732 NCVFHNKNVVFNYNS 688
N HN N +NYN+
Sbjct: 86 NNTIHNNNYKYNYNN 100
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 732 NCVFHNKNVVFNYNS 688
N HN N +NYN+
Sbjct: 86 NNTIHNNNYKYNYNN 100
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 732 NCVFHNKNVVFNYNS 688
N HN N +NYN+
Sbjct: 87 NNTIHNNNYKYNYNN 101
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 732 NCVFHNKNVVFNYNS 688
N HN N +NYN+
Sbjct: 87 NNTIHNNNYKYNYNN 101
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 732 NCVFHNKNVVFNYNS 688
N HN N +NYN+
Sbjct: 87 NNTIHNNNYKYNYNN 101
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -1
Query: 732 NCVFHNKNVVFNYNS 688
N HN N +NYN+
Sbjct: 87 NNTIHNNNYKYNYNN 101
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,607
Number of Sequences: 438
Number of extensions: 5653
Number of successful extensions: 25
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -