Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1646
(330 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 41 3e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 38 4e-05
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 38 4e-05
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 26 0.14
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 0.72
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 20 6.7
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 20 8.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 20 8.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 20 8.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 20 8.9
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 41.1 bits (92), Expect = 3e-06
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +2
Query: 29 IGEPPPETTWSWRDNIKLVNTERIKIENRDYHTDFTIVNAVRRDTGKYTLRAENCNGSDE 208
+G P PE TW R + L +++R++ + I R D G+Y+ EN G D
Sbjct: 1301 VGVPAPEVTWKVRGAV-LQSSDRLR---QLPEGSLFIKEVDRTDAGEYSCYVENTFGHDT 1356
Query: 209 ETVELTVLSKPSSPKGPLEVTDIHAEGCKVK 301
T +L V + P SP+ L T ++ KV+
Sbjct: 1357 VTHQLIVHAPPHSPQITLTATTTNSLTMKVR 1387
Score = 35.5 bits (78), Expect = 2e-04
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +2
Query: 32 GEPPPETTWSWRDNIKLVNTERIKI-----ENRDYHTDFTIVNAVRRDTGKYTLRAENCN 196
G P PE TW D +L NTER+++ N D + I + D G Y A +
Sbjct: 419 GNPTPEITWE-LDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLYKCIAASKV 477
Query: 197 GSDEETVELTVLSKP 241
GS E + L V P
Sbjct: 478 GSAEHSARLNVYGLP 492
Score = 30.3 bits (65), Expect = 0.006
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 155 RDTGKYTLR--AENCNGSDEETVELTVLSKPSSPKGP---LEVTDIHAEGCKVKWEKP 313
R Y LR AEN G+ + + +T+++ +P GP + V D+ KV W+ P
Sbjct: 943 RPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSIRVDDLDQHTLKVTWKPP 1000
Score = 25.4 bits (53), Expect = 0.18
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 155 RDTGKYTLRAENCNGSDEETVELTVLSKPSSPKGPLEVTD-IHAEGCKVKWEKPED 319
R G+Y AEN G+ + LTV + P P+ LE TD A+G + E D
Sbjct: 651 RHAGEYVCTAENAAGTASHSTTLTV-NVP--PRWILEPTDKAFAQGSDARVECKAD 703
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 37.5 bits (83), Expect = 4e-05
Identities = 27/101 (26%), Positives = 45/101 (44%)
Frame = +2
Query: 23 DVIGEPPPETTWSWRDNIKLVNTERIKIENRDYHTDFTIVNAVRRDTGKYTLRAENCNGS 202
+ +G+P E + I+ +T I+I + + N +D G YT + EN G+
Sbjct: 1336 NAVGDPTREWYKGQGEQIRTDSTRNIQILPSG---ELMLSNLQSQDGGDYTCQVENAQGN 1392
Query: 203 DEETVELTVLSKPSSPKGPLEVTDIHAEGCKVKWEKPEDDG 325
D+ LTV PS+P L VT + + W+ + G
Sbjct: 1393 DKLHYTLTVQVPPSAP--VLYVTSSTSSSILLHWKSGHNGG 1431
Score = 29.1 bits (62), Expect = 0.015
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Frame = +2
Query: 32 GEPPPETTWSWRDNIKLVNTERIKIE-----NRDYHTDFTIVNAVRRDTGKYTLRAENCN 196
G P P+ TW+ D L R I + D + I + + D G+Y+ AEN
Sbjct: 447 GNPTPQVTWAL-DGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVEDGGEYSCMAENRA 505
Query: 197 GSDEETVELTVLSKPSSPKGPLEVTDIHAEGCKVK 301
G L V P P +VT + E ++K
Sbjct: 506 GKVTHAARLNVYGLPYIRLIP-KVTAVAGETLRLK 539
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 310 LLPFDLAAFGVDIRN 266
LLPF AAF D+ +
Sbjct: 89 LLPFPAAAFRQDVHS 103
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 37.5 bits (83), Expect = 4e-05
Identities = 27/101 (26%), Positives = 45/101 (44%)
Frame = +2
Query: 23 DVIGEPPPETTWSWRDNIKLVNTERIKIENRDYHTDFTIVNAVRRDTGKYTLRAENCNGS 202
+ +G+P E + I+ +T I+I + + N +D G YT + EN G+
Sbjct: 1332 NAVGDPTREWYKGQGEQIRTDSTRNIQILPSG---ELMLSNLQSQDGGDYTCQVENAQGN 1388
Query: 203 DEETVELTVLSKPSSPKGPLEVTDIHAEGCKVKWEKPEDDG 325
D+ LTV PS+P L VT + + W+ + G
Sbjct: 1389 DKLHYTLTVQVPPSAP--VLYVTSSTSSSILLHWKSGHNGG 1427
Score = 29.1 bits (62), Expect = 0.015
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Frame = +2
Query: 32 GEPPPETTWSWRDNIKLVNTERIKIE-----NRDYHTDFTIVNAVRRDTGKYTLRAENCN 196
G P P+ TW+ D L R I + D + I + + D G+Y+ AEN
Sbjct: 447 GNPTPQVTWAL-DGFALPTNGRFMIGQYVTVHGDVISHVNISHVMVEDGGEYSCMAENRA 505
Query: 197 GSDEETVELTVLSKPSSPKGPLEVTDIHAEGCKVK 301
G L V P P +VT + E ++K
Sbjct: 506 GKVTHAARLNVYGLPYIRLIP-KVTAVAGETLRLK 539
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 310 LLPFDLAAFGVDIRN 266
LLPF AAF D+ +
Sbjct: 89 LLPFPAAAFRQDVHS 103
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 25.8 bits (54), Expect = 0.14
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 17 RVDVIGEPPPETTWSWRD-NIKLVNTERIKIENRDYHTDFTIVNAVRRDTGKYTLRAENC 193
+ DV G PPP W +++ +N I++ N D T V + G YT A
Sbjct: 331 KCDVTGTPPPPLVWRRNGADLETLNEPEIRVFN-DGSLYLTKVQLIH--AGNYTCHAVR- 386
Query: 194 NGSDEETVELTVLSKP 241
N +T LT+ + P
Sbjct: 387 NQDVVQTHVLTIHTIP 402
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 0.72
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 173 TLRAENCNGSDEETVELTVLSKPSSPKGPLEVTDIHAEGCKV 298
TL +GS E + S S +E++D+H CK+
Sbjct: 366 TLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKI 407
Score = 19.8 bits (39), Expect = 8.9
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -2
Query: 62 KTRWSLVEVHQ*HPPSCRI 6
K++ ++E+ H P+C+I
Sbjct: 389 KSKMEVMELSDLHHPNCKI 407
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.2 bits (40), Expect = 6.7
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +3
Query: 24 MSLVNLHQRPPGLGGTTLSW*TQNASRLRIAITTLISRS*TQ 149
+S + H PG TT++ T + TT + + TQ
Sbjct: 641 LSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQ 682
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Frame = -2
Query: 98 CVLCSPA*CCPAKTRWSLVEVHQ*HPP 18
C C P C T E+ + PP
Sbjct: 427 CTNCGPNPCTHTTTNGCTAELRKKEPP 453
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Frame = -2
Query: 98 CVLCSPA*CCPAKTRWSLVEVHQ*HPP 18
C C P C T E+ + PP
Sbjct: 413 CTNCGPNPCTHTTTNGCTAELRKKEPP 439
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Frame = -2
Query: 98 CVLCSPA*CCPAKTRWSLVEVHQ*HPP 18
C C P C T E+ + PP
Sbjct: 447 CTNCGPNPCTHTTTNGCTAELRKKEPP 473
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 19.8 bits (39), Expect = 8.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Frame = -2
Query: 98 CVLCSPA*CCPAKTRWSLVEVHQ*HPP 18
C C P C T E+ + PP
Sbjct: 396 CTNCGPNPCTHTTTNGCTAELRKKEPP 422
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,169
Number of Sequences: 438
Number of extensions: 1922
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7342137
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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