Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1638
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    43   3e-06
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              26   0.31 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   8.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 6/178 (3%)
 Frame = +1

Query: 13  EIEALGGKALPCIVDVRDEKQVQKAVDEAVKKFNGIDILVNNASAISLTGTAQTD-MKRY 189
           E+++  GK +P   D+ ++  + K ++   K    IDIL+NNA+ I++  T Q D +  +
Sbjct: 50  ELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNAT-INIDVTLQNDEVLDW 108

Query: 190 DLMHNINTRGTFLASKICLPVLKNS--NHAHILNLSPPLNMNPYWFSIH-VAYTMAKYGM 360
             + +IN  G     +  L ++K    N+  I+N++    +N    + +  AY  +K  +
Sbjct: 109 KKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCAL 168

Query: 361 SMCVLGMSEEFK--PFNIGVNALWPKTAIATAAIEMLTGDTSTSRKPEIVSDAAYLML 528
           +     +  E      NI V ++ P         + L  ++  + KP+ VS+     L
Sbjct: 169 TTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFAL 226


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 52  VDVRDEKQVQKAVDEAVKKFNGID 123
           +DV DEK VQ   +  +KKFNG D
Sbjct: 52  IDVEDEK-VQLFSECLIKKFNGYD 74


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 123 INAIELFHGFINSLLHLFLISNINNAWQCLSTKSLNFSCS 4
           ++++ L+ G+ NSLL+  + + +N  ++    + L F CS
Sbjct: 408 LSSLFLWLGYCNSLLNPIIYATLNRDFRKPFREILYFRCS 447


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 476 RQQVASLRSFPTRRTSCSAKTQK 544
           +  VASLRS   + TS   K  K
Sbjct: 256 KMNVASLRSSENQNTSAECKLAK 278


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 136  NASAISLTGTAQTDMKRYDLMHNINTRGTFLASKI 240
            N  + S +G   T+M  +   HN+N   T   +++
Sbjct: 1660 NVISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQV 1694


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 476 RQQVASLRSFPTRRTSCSAKTQK 544
           +  VASLRS   + TS   K  K
Sbjct: 132 KMNVASLRSSENQNTSAECKLAK 154


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 476 RQQVASLRSFPTRRTSCSAKTQK 544
           +  VASLRS   + TS   K  K
Sbjct: 6   KMNVASLRSSENQNTSAECKLAK 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,570
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)