Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1631
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   2.6  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 169 TARFHSNFEDLSRTDGNS 116
           T+  HS +ED    DGNS
Sbjct: 227 TSSCHSRYEDSRHEDGNS 244


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 321 NKFDQFFHTRIFNFKNSTNKYVRLTTLKINNN 416
           NK +   + R  + ++++N+++ +TT+   NN
Sbjct: 446 NKINNHEYKRSVSRESNSNQFILMTTVNEGNN 477


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 169 TARFHSNFEDLSRTDGNS 116
           T+  HS +EDL   D NS
Sbjct: 227 TSSCHSRYEDLRHEDRNS 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,813
Number of Sequences: 438
Number of extensions: 1523
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)