Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1629
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 168 YVSNNQISRSVVLF*YFLFIY 106
           Y   N  S S +L  YF+F+Y
Sbjct: 6   YFGKNFPSTSFILINYFIFLY 26


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 486 VIILKKYIFYVIENLKKHT*TTELKIVFFYYPVD 587
           +II +K +FY +  +      + L ++ FY P +
Sbjct: 227 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAE 260


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 473 KQGFSNNSKKIYFLCN 520
           K  ++NN KK+Y+  N
Sbjct: 97  KYNYNNNCKKLYYNIN 112


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 452 NSAYPQLKQGFSNNSKKIYFLCN 520
           N  Y      ++NN KK+Y+  N
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 452 NSAYPQLKQGFSNNSKKIYFLCN 520
           N  Y      ++NN KK+Y+  N
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 452 NSAYPQLKQGFSNNSKKIYFLCN 520
           N  Y      ++NN KK+Y+  N
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 452 NSAYPQLKQGFSNNSKKIYFLCN 520
           N  Y      ++NN KK+Y+  N
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNIN 117


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +3

Query: 486 VIILKKYIFYVIENLKKHT*TTELKIVFFYYPVD 587
           + + +K +FY +  +      + L ++ FY P D
Sbjct: 229 ITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPAD 262


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 323 SFKSNSNLNSPRRDIDILTSHFHFCYL 243
           S +SN+N +S   +I I  +    C+L
Sbjct: 256 SLRSNANTSSQSAEIRIAKAAITICFL 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,028
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)