Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1611
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.51 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.51 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.51 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.51 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.51 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   2.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   2.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 308 DKTL*EGQRESIIYCTPTKDTMRNIKYKKKYNWQSY 415
           D+T  E  RE  I  + + +T+ N  YK  YN  +Y
Sbjct: 68  DRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNY 103


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 308 DKTL*EGQRESIIYCTPTKDTMRNIKYKKKYNWQSY 415
           D+T  E  RE  I  + + +T+ N  YK  YN  +Y
Sbjct: 69  DRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNY 104


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 308 DKTL*EGQRESIIYCTPTKDTMRNIKYKKKYNWQSY 415
           D+T  E  RE  I  + + +T+ N  YK  YN  +Y
Sbjct: 69  DRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNY 104


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 308 DKTL*EGQRESIIYCTPTKDTMRNIKYKKKYNWQSY 415
           D+T  E  RE  I  + + +T+ N  YK  YN  +Y
Sbjct: 69  DRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNY 104


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 308 DKTL*EGQRESIIYCTPTKDTMRNIKYKKKYNWQSY 415
           D+T  E  RE  I  + + +T+ N  YK  YN  +Y
Sbjct: 69  DRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNY 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 308 DKTL*EGQRESIIYCTPTKDTMRNIKYKKKYNWQSY 415
           D+   E  RE  I  + + +T+ N  YK  YN  +Y
Sbjct: 68  DRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNY 103


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = -3

Query: 376 SHCVFCWCTINNTLSLSLSQGFVEDTIVKIIEKY 275
           +HC      +NN +      G +E +++ ++E++
Sbjct: 84  AHCAGVITALNNVIDFLHDPGLMEASLIGLVERH 117


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = -3

Query: 376 SHCVFCWCTINNTLSLSLSQGFVEDTIVKIIEKY 275
           +HC      +NN +      G +E +++ ++E++
Sbjct: 84  AHCAGVITALNNVIDFLHDPGLMEASLIGLVERH 117


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 330 RERVLFIVHQQKT 368
           RERV  +VH+Q+T
Sbjct: 173 RERVASVVHRQET 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,925
Number of Sequences: 438
Number of extensions: 3357
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)