Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1605
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.50 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 477  PRFSKSRNYARNPLLQAIRVTYR 545
            P+  K RNY R+ L++A+R   R
Sbjct: 1035 PKRGKYRNYDRDSLVEAVRAVQR 1057


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 RTPERSTRLHALNFNDEFLLLWLLEIVRLNNIFR*P 224
           R+PE   R +A N +  F+L   LE     ++FR P
Sbjct: 80  RSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGP 115


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 418 YGAHIWWRSLTGYKVPPCIC 477
           + A +WWR++   +VP   C
Sbjct: 179 FPAIVWWRAVRTEEVPEDKC 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,931
Number of Sequences: 438
Number of extensions: 4171
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)