Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1568
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    50   1e-08
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    39   2e-05
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    34   4e-04
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    33   0.001
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    32   0.002
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    31   0.003
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    31   0.003
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    30   0.006
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    27   0.045
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         26   0.10 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    26   0.10 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    26   0.10 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.42 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   6.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   6.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   6.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 49.6 bits (113), Expect = 1e-08
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +1

Query: 184 AKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDV 318
           A+  L+ +  W  LEF FPN  A+  A++   Y+PG+S+PIDVDV
Sbjct: 20  AQEKLKNIYSWKALEFAFPNGYAKLAAIKSGSYIPGASLPIDVDV 64


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 38.7 bits (86), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 175 GLGAKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQH 324
           G    N L V+ +W  L++ F N+E R  A++   Y    + P+DVD  H
Sbjct: 29  GKNLTNTLNVIHKWKYLDYDFDNDERRQAAIQSGEYDRTKNYPLDVDQWH 78


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 34.3 bits (75), Expect = 4e-04
 Identities = 9/35 (25%), Positives = 25/35 (71%)
 Frame = +1

Query: 214 WAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDV 318
           W  L++ +P+E +++ A+ K  Y+P +++P+ +++
Sbjct: 40  WRTLDYAYPDEASKTMAMMKGEYIPENALPVGIEI 74


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 190 NNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVD 315
           N++ V+ +W  L++ F ++E R  A++   Y    + P DVD
Sbjct: 33  NSMNVIHEWKYLDYDFGSDERRQAAMQSGEYDHTKNYPFDVD 74


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 31.9 bits (69), Expect = 0.002
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 187 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQH 324
           ++++ V+ +W  +++ F ++E R  A++   Y    + P DVD  H
Sbjct: 32  EHSMNVIHEWKYIDYDFGSDEKRQAAIQSGEYDYTKNYPFDVDQWH 77


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 31.5 bits (68), Expect = 0.003
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 190 NNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVD 315
           N  +V  QW   ++ F ++E R  A++   Y   ++VPIDVD
Sbjct: 30  NIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKNNVPIDVD 71


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 31.5 bits (68), Expect = 0.003
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 187 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVD 315
           + +L V+ +W   ++ F +EE R  A++   Y    + P DVD
Sbjct: 29  EKSLNVIHEWKYFDYDFGSEERRQAAIQSGEYDHTKNYPFDVD 71


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 0.006
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +1

Query: 190 NNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVD 315
           ++++V+ +W  ++F F ++E R  A++   +    + P DVD
Sbjct: 35  HSMKVIYEWKHIDFDFGSDERRDAAIKSGEFDHTKNYPFDVD 76


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 0.045
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 190 NNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVD 315
           N+L+V+ +W  +++ F ++E R  A++   Y    +  +D D
Sbjct: 27  NSLKVIYEWKYIDYDFGSDEKRQAAIQSGDYNYTMNYLLDTD 68


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.10
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 175 GLGAKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQH 324
           G     +L ++ +W   ++ F ++E R  A+    Y   ++ P D+D  H
Sbjct: 24  GESLNKSLPILHEWKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWH 73


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.10
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 175 GLGAKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQH 324
           G     +L ++ +W   ++ F ++E R  A+    Y   ++ P D+D  H
Sbjct: 24  GESLNKSLPILHEWKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWH 73


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.10
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 175 GLGAKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQH 324
           G     +L ++ +W   ++ F ++E R  A+    Y   ++ P D+D  H
Sbjct: 24  GESLNKSLPILHEWKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWH 73


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.42
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 244  EEARSYALEKRFYVPGSS 297
            E A+SY ++ R +VPG S
Sbjct: 1186 ESAKSYVVDVRVHVPGES 1203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -3

Query: 215  HCLTTRRLFLAPRPGQQHAKQYDNRKNRSIPY 120
            HC   RR    PR G      +   ++   PY
Sbjct: 1694 HCAPNRRCPPPPRMGSAEGLSHRGMEDEICPY 1725


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 149 HIVWRAVGPVSEL 187
           +I+ R++GPVSEL
Sbjct: 67  NILIRSMGPVSEL 79


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 237 SERRSPVICIRETILRTWVLGA 302
           SE+R P+   R      WV GA
Sbjct: 76  SEKRIPLYVCRVLHTTVWVAGA 97


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 226 PVPPIASPRGD 194
           P+PP+  P+G+
Sbjct: 43  PLPPVTPPQGE 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,769
Number of Sequences: 438
Number of extensions: 2035
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)