Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1545
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   8.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 16  MIKGVTKGFQYKMRAVYAH 72
           M++G+  G QY     Y H
Sbjct: 740 MLRGIASGMQYLAEMNYVH 758


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 95  LRVIQLLRYVTSW 133
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 95  LRVIQLLRYVTSW 133
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 95  LRVIQLLRYVTSW 133
           LR+ +L+RYV+ W
Sbjct: 220 LRLSRLVRYVSQW 232


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 68  LTSPLTVSPLRVIQLLR 118
           L +P+T +P  V QLLR
Sbjct: 156 LPTPVTPTPTTVQQLLR 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,866
Number of Sequences: 438
Number of extensions: 1786
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)