Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1541
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.5  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 153 NFYFNINSHNLIQFNCNFV 97
           N Y+N N++  + +N N++
Sbjct: 315 NNYYNNNNYKKLYYNINYI 333


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +3

Query: 486 IASAYTKRGYNVLSVDIHWFVTTEYPI 566
           I   Y    YN+   D +W +T  + I
Sbjct: 15  ITETYFVSAYNLNQEDSNWIITNSFII 41


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 290 YNHAEVIKTSRHYGFSIEKLILVEE 364
           YNH   +    HYG  + K  L  E
Sbjct: 243 YNHVLKLHQVAHYGEKVYKCTLCHE 267


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 421 IKLTLGSLANSFICL*PYLFLDKNEFFDRKT 329
           +K+T+  +A  FIC  PY  +    + DR +
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLWYWIDRNS 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,066
Number of Sequences: 438
Number of extensions: 3201
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)