Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1535
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 344 CNSICRHSPFKVCDCQV 394
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 215 FTVXYVXXTTKANRLAK 265
           FTV Y    TK NR+++
Sbjct: 732 FTVVYAALLTKTNRISR 748


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 83  KQEEAFQCSFTYKASVDVLS 142
           K  + FQC   YK   D+L+
Sbjct: 115 KISKIFQCFMKYKTITDILN 134


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 321 AATRAXMGATAYVGIHPSKC 380
           +ATR  +GA A VG   + C
Sbjct: 451 SATRYDLGAVATVGTTVAPC 470


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = +2

Query: 2    WRARGPCRFGEERQNEVQQAGDFLKKEKQEEAFQCS 109
            W+ RG      +R  ++ +   F+K+  + +A + S
Sbjct: 1310 WKVRGAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYS 1345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,397
Number of Sequences: 438
Number of extensions: 1289
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)