Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1533
(671 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.053
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.053
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.053
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.053
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.070
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.070
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.070
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.070
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 26 0.38
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.0
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 3.5
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 22 4.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 6.1
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 8.1
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.053
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
L S + YF CI F +
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMV 268
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.053
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
L S + YF CI F +
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMV 268
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.053
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
L S + YF CI F +
Sbjct: 246 TLPQVSDAIPLLGSYFNCIMFMV 268
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.053
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 255 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 313
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
L S + YF CI F +
Sbjct: 314 TLPQVSDAIPLLGSYFNCIMFMV 336
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.070
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
+ S + YF CI F +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMV 268
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.070
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
+ S + YF CI F +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMV 268
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.070
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 187 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 245
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
+ S + YF CI F +
Sbjct: 246 SMPTTSDAVPLIGSYFNCIMFMV 268
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.3 bits (60), Expect = 0.070
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -1
Query: 338 SIKTKRHTLYYFFN*FVSVLFTI*KLLIDFVKNIFDNAHFLL-*TIMVNPHVMLGLQAEF 162
+I+ +R TLYYFFN V + L+ F L TI+++ V L L AE
Sbjct: 255 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAE- 313
Query: 161 ILKNNSLQLNSYKDYF-CISFAI 96
+ S + YF CI F +
Sbjct: 314 SMPTTSDAVPLIGSYFNCIMFMV 336
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.8 bits (54), Expect = 0.38
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 356 INLIFVSIKTKRHTLYYFFN 297
I++ FV I +R TLYYFFN
Sbjct: 219 IDITFVVI-IRRRTLYYFFN 237
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 627 GRLYVVWSSCLFCL 668
G L VVW C FC+
Sbjct: 211 GTLAVVWIMCYFCI 224
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 2.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 627 GRLYVVWSSCLFCL 668
G L VVW C FC+
Sbjct: 264 GTLAVVWIMCYFCI 277
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.6 bits (46), Expect = 3.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 592 VNLLQPFENTNW 627
V+ LQPF NT W
Sbjct: 558 VSFLQPFSNTLW 569
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 22.2 bits (45), Expect = 4.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 627 GRLYVVWSSCLFCL 668
G L +VW C FC+
Sbjct: 178 GTLLLVWILCYFCI 191
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 6.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -3
Query: 657 SKMTRLRITFPVSVFKRLEEIHL 589
+++TRL+ P+ ++L+E+HL
Sbjct: 222 NEITRLQENSPLLDLRQLQELHL 244
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 270 NREQHRNESIEKIIERMSFRFNANKN*INYLFHHS 374
+R + KII +S +N N N NY ++++
Sbjct: 302 DRTERERSKERKIISSLSNNYNYNNN--NYKYNYN 334
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,652
Number of Sequences: 438
Number of extensions: 2584
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -