Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1507
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.58 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.4  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   7.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 207 KKILYLTPLTLRANCLFLLSLYQQESVE 124
           K ILY+  LTL+ +C     +Y  ++ E
Sbjct: 149 KTILYMVKLTLKLSCAMNFLIYPHDTQE 176


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 367 VKLLSLIYISTEYFFAIQAW 308
           V L SL+Y+  E    IQ W
Sbjct: 6   VLLASLLYLGNESVHGIQKW 25


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 543 YTVHTENVYVTVLMMVARLKI 605
           YT HT+   VT + +V  LKI
Sbjct: 73  YTEHTKRKTVTAMDVVYALKI 93


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 207 KKILYLTPLTLRANCLFLLSLYQQES 130
           K +LY++ LTL  +C      Y  ++
Sbjct: 118 KTLLYMSKLTLVLSCAMKFESYPHDT 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,657
Number of Sequences: 438
Number of extensions: 2527
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)