Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1501
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   0.97 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   3.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   6.8  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 0.97
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 YGIIMNY*IKDLQ*FCDRNFALEYFLIKKKRNGY 246
           Y +  NY  K+++ + D  + L+YF+   + N Y
Sbjct: 200 YIVNTNYSSKNMREYNDPEYKLDYFMEDVELNAY 233


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 305 IYHAAHRKPTIXCLAPWSRLYPLRFFFIRKYSK 207
           I +  +RKP+   +APW     +R  FIR+  K
Sbjct: 319 ILNVHYRKPSTHKMAPW-----VRKIFIRRLPK 346


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 145 YGIIMNY*IKDLQ*FCDRNFALEYFLIKKKRNGY 246
           Y +  NY  K ++ + D  + L+YF+   + N Y
Sbjct: 200 YIVNTNYSSKYMREYNDPEYKLDYFMEDVELNAY 233


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 8   QEFGTRATCHIHIKRK*NCSVL 73
           + FG++ T  +HIK   + SV+
Sbjct: 267 ETFGSKKTMELHIKTHSDSSVV 288


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 59  NCSVLHYNII 88
           NC  L+YNII
Sbjct: 350 NCKKLYYNII 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,067
Number of Sequences: 438
Number of extensions: 1819
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)