Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1499
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.68 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.89 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.3  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 220 VMGAADIICSTLGKAVSGAAGGYTTGPKELVT 315
           V+    II ++  K   G   G TTGP E+VT
Sbjct: 381 VLSRIGIILASPLKREGGPPTGATTGPNEIVT 412


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 207 RVLRCYGGGGYHLFDPGQSSEWSGWRLYNRTE 302
           RV RCY      L D  Q+  W G  +    E
Sbjct: 241 RVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNE 272


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 502 HPICPVMVGEASLAVDLASGMLERGVYVVAFSYPV 606
           H I  +       A+ +   ++ER VY V  S+P+
Sbjct: 71  HTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPL 105


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 KAVSGAAGGYTTGPKELVT 315
           K   G   G TTGP E+VT
Sbjct: 408 KREGGPPTGATTGPNEIVT 426


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 KAVSGAAGGYTTGPKELVT 315
           K   G   G TTGP E+VT
Sbjct: 428 KREGGPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 KAVSGAAGGYTTGPKELVT 315
           K   G   G TTGP E+VT
Sbjct: 377 KREGGPPTGATTGPNEIVT 395


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 289 TTGPKELVTLLRNVSRPYLFS 351
           T GP+  V LL+N +  Y+F+
Sbjct: 29  TYGPEANVNLLKNRTGRYMFT 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,595
Number of Sequences: 438
Number of extensions: 3962
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)