Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1495
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   3.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   4.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   4.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 320  FLPRYPCPSSCAP 282
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 314 PRYPCPSSCAPSLSRTRESLSCRFRP 237
           P  P P    P++ R R  L+ RF P
Sbjct: 372 PPTPFPRFIPPNVYRFRPPLNPRFEP 397


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 120 CSTKTAMAPSRPKSWA 167
           C+T T  AP RP   A
Sbjct: 8   CTTATLAAPQRPSGGA 23


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 314 PRYPCPSSCAPSLSRTRESLSCRFRP 237
           P  P P    P+  R R  L+ RF P
Sbjct: 149 PSTPFPRFIPPNAYRFRPPLNPRFEP 174


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 314 PRYPCPSSCAPSLSRTRESLSCRFRP 237
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 314 PRYPCPSSCAPSLSRTRESLSCRFRP 237
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 314 PRYPCPSSCAPSLSRTRESLSCRFRP 237
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 314 PRYPCPSSCAPSLSRTRESLSCRFRP 237
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 11 RRSL*FFSVAPDNP 52
          +RSL FF + P++P
Sbjct: 32 QRSLEFFDLLPEDP 45


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 302 CPSSCAPSLSRTRES 258
           CP  C P L +++ S
Sbjct: 347 CPLHCKPELGQSQSS 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,159
Number of Sequences: 438
Number of extensions: 1431
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)