Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1491
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    47   2e-07
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    47   2e-07
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +3

Query: 351 CPVNEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGTCVSIDE 530
           CP NE F+ C  G C Q  C  +     C     ++C PGCVC  G+LR+K   CV   +
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNVVPKPLC----IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 531 C 533
           C
Sbjct: 91  C 91



 Score = 41.1 bits (92), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 159 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKC 338
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+P+ KC
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 537 RELCPVNEVYSSC 575
           R  CP NE++S C
Sbjct: 34  RGKCPSNEIFSRC 46


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +3

Query: 351 CPVNEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGTCVSIDE 530
           CP NE F+ C  G C Q  C  +     C     ++C PGCVC  G+LR+K   CV   +
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNVVPKPLC----IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 531 C 533
           C
Sbjct: 91  C 91



 Score = 41.1 bits (92), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 159 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKC 338
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+P+ KC
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 537 RELCPVNEVYSSC 575
           R  CP NE++S C
Sbjct: 34  RGKCPSNEIFSRC 46


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +3

Query: 210 KCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVP 350
           K ++    +  Q  D      G    I Y+ DENG  +     PT P
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAP 107


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/50 (20%), Positives = 22/50 (44%)
 Frame = -3

Query: 571 LEYTSFTGHSSLWHSSIDTHVPFFDLKKPPSQTQPGSHSSVDCVLHSDNL 422
           + Y++   HS L  +   TH+    + +  S  +P   +S +  +  D +
Sbjct: 370 VHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCESQMMGDEM 419


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 284 QNRISERRKWNLYTAR 331
           QNR  E   WNL T R
Sbjct: 30  QNRSQEEDLWNLATDR 45


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 28 CRFLQPGGS 2
          C FL PGGS
Sbjct: 68 CEFLNPGGS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,183
Number of Sequences: 438
Number of extensions: 3461
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)