Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1483
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   4.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   4.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.5  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 413 HYFNSSFNANIQHNNNNRTVT*LNQPSHTN 324
           H  N++ N NIQ+ NN       N   + N
Sbjct: 413 HCVNNNQNDNIQNTNNQNDNNQKNNKKNAN 442


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 416 IHYFNSSFNA 387
           +H+F SSFNA
Sbjct: 76  VHHFESSFNA 85


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 332 HTNTIIILWNRKIDMIFTQI 273
           +T  +   WN+ +DM+F +I
Sbjct: 146 YTPEVAEAWNKTLDMMFGKI 165


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 332 HTNTIIILWNRKIDMIFTQI 273
           +T  +   WN+ +DM+F +I
Sbjct: 146 YTPEVAEAWNKTLDMMFGKI 165


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 54  NLKYT*EIPEKKIYFKVSSCRIEMILIDLEKFF 152
           N KY      KK+Y+K     IE I + +  ++
Sbjct: 328 NYKYNYNNYNKKLYYKNYIINIEQIPVPVPVYY 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,792
Number of Sequences: 438
Number of extensions: 1601
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)